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  • edam-bioimaging: Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..
  • OpenRefine: OpenRefine is a free, open source power tool for working with messy data and improving it
  • awesome-data-labeling: A curated list of awesome data labeling tools
  • nidm-specs: Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance
  • pybids: Python tools for querying and manipulating BIDS datasets.
  • databrary: behavioral science research media data sharing web application
  • bids2pype: from bids data structure and model extension to info ready for nipype
  • eeg-database: EEG/ERP portal enables community researchers to store, update, download and search data and metadata from EEG/ERP experiments. The system is developed as a standalone product; the database access is available through a web interface.
  • label-studio: Label Studio is a multi-type data labeling and annotation tool with standardized output format
  • dvn: Dataverse Network (DVN) 3.x, distinct from the newer code base at https://github.com/IQSS/dataverse
  • bids-examples: None
  • nidb: NeuroInformatics Database
  • grabbit: get grabby with file trees
  • sodapy: Python client for the Socrata Open Data API
  • repro-case-studies: Reproducibility case study contributions
  • skluma-local-deploy: A file-level metadata extraction service that interfaces with zero cloud services.
  • BioSolr: A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"
  • heudiconv: A flexible DICOM converter for organizing brain imaging data into structured directory layouts
  • openNeuroData: A proposal for data standardization in neurophysiology
  • bidsify: Tool to convert raw MRI datasets to BIDS-compatible datasets
  • neurosynth-data: None
  • python-xmp-toolkit: Python XMP Toolkit
  • owmeta: Unified, simple data access python library for data & facts about C. elegans anatomy

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