- edam-bioimaging: Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..
- OpenRefine: OpenRefine is a free, open source power tool for working with messy data and improving it
- awesome-data-labeling: A curated list of awesome data labeling tools
- nidm-specs: Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance
- pybids: Python tools for querying and manipulating BIDS datasets.
- databrary: behavioral science research media data sharing web application
- bids2pype: from bids data structure and model extension to info ready for nipype
- eeg-database: EEG/ERP portal enables community researchers to store, update, download and search data and metadata from EEG/ERP experiments. The system is developed as a standalone product; the database access is available through a web interface.
- label-studio: Label Studio is a multi-type data labeling and annotation tool with standardized output format
- dvn: Dataverse Network (DVN) 3.x, distinct from the newer code base at https://github.com/IQSS/dataverse
- bids-examples: None
- nidb: NeuroInformatics Database
- grabbit: get grabby with file trees
- sodapy: Python client for the Socrata Open Data API
- repro-case-studies: Reproducibility case study contributions
- skluma-local-deploy: A file-level metadata extraction service that interfaces with zero cloud services.
- BioSolr: A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"
- heudiconv: A flexible DICOM converter for organizing brain imaging data into structured directory layouts
- openNeuroData: A proposal for data standardization in neurophysiology
- bidsify: Tool to convert raw MRI datasets to BIDS-compatible datasets
- neurosynth-data: None
- python-xmp-toolkit: Python XMP Toolkit
- owmeta: Unified, simple data access python library for data & facts about C. elegans anatomy