• eman2: A scientific image processing software suite with a focus on CryoEM and CryoET
• DeOldify: A Deep Learning based project for colorizing and restoring old images (and video!)
• napari: napari: a fast, interactive, multi-dimensional image viewer for python
• Suite2P: Tools for processing 2P recordings
• labelImg: 🖍️ LabelImg is a graphical image annotation tool and label object bounding boxes in images
• visionworkbench: The NASA Vision Workbench is a general purpose image processing and computer vision library developed by the Autonomous Systems and Robotics (ASR) Area in the Intelligent Systems Division at the NASA Ames Research Center.
• ITK.jl: Julia Wrapper for ITK
• 3D-F-CNN-BrainStruct: This repository contains materials employed in our work to segment subcortical brain structures by employing a 3D fully Convolutional Neural Network.
• relion: Image-processing software for cryo-electron microscopy
• SimpleElastix: Multi-lingual medical image registration library
• CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
• thunder: scalable analysis of images and time series
• pyhrf: PyHRF is a set of tools to analyze fMRI data and specifically study hemodynamics.
• PSSR: Deep Learning-Based Point-Scanning Super-Resolution (PSSR)
• quickNAT_pytorch: PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
• SimpleITK: SimpleITK: a simplified layer build on top of the Insight Toolkit (ITK), intended to facilitate its use in rapid prototyping, education and interpreted languages.
• neural-enhance: Super Resolution for images using deep learning.
• colmap: COLMAP - Structure-from-Motion and Multi-View Stereo
• ANTs: Advanced Normalization Tools (ANTs)
• Rectlabel-support: RectLabel - An image annotation tool to label images for bounding box object detection and segmentation.
• cet_toolbox: None
• DAIN: Depth-Aware Video Frame Interpolation (CVPR 2019)
• OMETIFF.jl: I/O operations for OME-TIFF files in Julia with a focus on correctness
• clesperanto.github.io: clEsperanto - GPU-accelerated image processing across languages and platforms
• jupyter-omeroanalysis-desktop: Run OMERO clients in a Linux desktop using Jupyter
• ffn: Flood-Filling Networks for instance segmentation in 3d volumes.