• tetrad: Repository for the Tetrad Project, www.phil.cmu.edu/tetrad.
• DGM: Dynamical graphical models for multivariate time series data to estimate directed dynamic relationships in networks.
• bctpy: brain connectivity toolbox for python
• FlashX: FlashX is a collection of big data analytics tools that perform data analytics in the form of graphs and matrices.
• brainx: Tools for analysis of brain imaging-derived networks, based on NetworkX
• matlab-bgl: A graph library for Matlab based on the boost graph library
• pyconto: Python Connectome Toolbox