- workbench: Connectome Workbench
- life: Please use the new version of LiFE: www.github.com/brain-life/encode
- SPM_connectome: Analysis of the data from the human connectome with SPM
- C-PAC: Configurable Pipeline for the Analysis of Connectomes
- cmp: Connectome Mapper
- pyconto: Python Connectome Toolbox
- myconnectome: Code for the myconnectome project